STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VTA1Vacuolar protein sorting-associated protein VTA1. (305 aa)    
Predicted Functional Partners:
CHMP5
Charged multivesicular body protein 5.
   
 0.998
VPS4A
Vacuolar protein sorting-associated protein 4A; Belongs to the AAA ATPase family.
   
 0.996
VPS4B
Vacuolar protein sorting-associated protein 4B; Belongs to the AAA ATPase family.
   
 0.996
CHMP1A
Charged multivesicular body protein 1a.
    
 0.992
CHMP1B
Charged multivesicular body protein 1b.
    
 0.992
IST1
IST1.
   
 
 0.958
CHMP2A
Charged multivesicular body protein 2a.
    
 0.923
GCH1
GTP cyclohydrolase 1.
   
   0.911
LOC110473306
Charged multivesicular body protein 3.
    
 0.876
CHMP4C
Charged multivesicular body protein 4c.
    
 0.848
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.