STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPEPL1Putative aminopeptidase NPEPL1. (523 aa)    
Predicted Functional Partners:
LOC110475983
Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
 
  0.631
RNF145
RING finger protein 145.
      
 0.601
PRPF19
Pre-mRNA-processing factor 19.
   
 
 0.589
STX16
Syntaxin-16; Belongs to the syntaxin family.
 
 
  
 0.588
USP39
U4/U6.U5 tri-snRNP-associated protein 2.
      
 0.557
RIPOR2
Protein FAM65B.
      
 0.534
HIPK3
Homeodomain-interacting protein kinase 3.
    
 
 0.524
C20orf85
Uncharacterized protein C20orf85.
      
 0.516
NCOA5
Nuclear receptor coactivator 5.
      
 0.509
MRPS33
28S ribosomal protein S33, mitochondrial.
      
 0.501
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.