STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCF25Transcription factor 25. (605 aa)    
Predicted Functional Partners:
LTN1
E3 ubiquitin-protein ligase listerin.
   
 
 0.787
ERMN
Ermin.
    
 
 0.739
H6PD
GDH/6PGL endoplasmic bifunctional protein.
   
  
 0.692
UFD1
Ubiquitin fusion degradation protein 1.
    
 
 0.656
ANKZF1
Ankyrin repeat and zinc finger domain-containing protein 1.
   
 
 0.651
VCP
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
   
 
 0.607
SPIRE2
Protein spire 2.
 
  
 
 0.575
FANCA
Fanconi anemia group A protein.
      
 0.554
RNF123
E3 ubiquitin-protein ligase RNF123.
      
 0.532
BANP
Protein BANP.
      
 0.519
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.