STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH95344.1Oligopeptide transport system permease protein. (304 aa)    
Predicted Functional Partners:
SHH95319.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.999
SHH95332.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.999
SHH95357.1
Oligopeptide transport system permease protein.
 
 0.999
SHH95374.1
Oligopeptide transport system substrate-binding protein.
 
 0.996
SHI20888.1
Peptide/nickel transport system ATP-binding protein.
 
 0.995
SHI20873.1
Peptide/nickel transport system permease protein.
 
 0.988
SHI08360.1
Cationic peptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   
 0.979
SHI08375.1
Cationic peptide transport system ATP-binding protein.
 
     0.976
SHI08323.1
Cationic peptide transport system substrate-binding protein.
 0.968
SHI20866.1
Peptide/nickel transport system substrate-binding protein.
 0.939
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.