yebI protein (Shigella dysenteriae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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Experiments

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[Homology]

Score

yebI

Conserved hypothetical protein; Code: P; COG: COG1108; orf. (261 aa)

Predicted Functional Partners:

yebM

0.999

yebL

0.998

sitA

0.911

ygiE

0.791

sitB

0.771

SDY_1033

0.643

zntB

0.604

ptr

0.590

sitD

0.520

yebA

0.504

Your Current Organism:

Shigella dysenteriae

NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDY_1033	sitA	SDY_1033	SDY_1457	Conserved hypothetical protein; Code: R; COG: COG3443; orf.	Iron transport protein, periplasmic-binding protein; Code: P; COG: COG0803; Belongs to the bacterial solute-binding protein 9 family.	0.938
SDY_1033	sitB	SDY_1033	SDY_1456	Conserved hypothetical protein; Code: R; COG: COG3443; orf.	Iron transport protein, ATP-binding component; Code: P; COG: COG1121.	0.657
SDY_1033	sitD	SDY_1033	SDY_1454	Conserved hypothetical protein; Code: R; COG: COG3443; orf.	Iron transport protein, inner membrane component; Code: P; COG: COG1108.	0.546
SDY_1033	yebI	SDY_1033	SDY_1146	Conserved hypothetical protein; Code: R; COG: COG3443; orf.	Conserved hypothetical protein; Code: P; COG: COG1108; orf.	0.643
SDY_1033	yebL	SDY_1033	SDY_1144	Conserved hypothetical protein; Code: R; COG: COG3443; orf.	Putative adhesin; Code: P; COG: COG4531; Belongs to the bacterial solute-binding protein 9 family.	0.966
SDY_1033	yebM	SDY_1033	SDY_1145	Conserved hypothetical protein; Code: R; COG: COG3443; orf.	Putative ATP-binding component of a transport system; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.	0.717
ptr	yebI	SDY_3038	SDY_1146	Protease III; Code: O; COG: COG1025; Belongs to the peptidase M16 family.	Conserved hypothetical protein; Code: P; COG: COG1108; orf.	0.590
ptr	yebL	SDY_3038	SDY_1144	Protease III; Code: O; COG: COG1025; Belongs to the peptidase M16 family.	Putative adhesin; Code: P; COG: COG4531; Belongs to the bacterial solute-binding protein 9 family.	0.439
sitA	SDY_1033	SDY_1457	SDY_1033	Iron transport protein, periplasmic-binding protein; Code: P; COG: COG0803; Belongs to the bacterial solute-binding protein 9 family.	Conserved hypothetical protein; Code: R; COG: COG3443; orf.	0.938
sitA	sitB	SDY_1457	SDY_1456	Iron transport protein, periplasmic-binding protein; Code: P; COG: COG0803; Belongs to the bacterial solute-binding protein 9 family.	Iron transport protein, ATP-binding component; Code: P; COG: COG1121.	0.999
sitA	sitD	SDY_1457	SDY_1454	Iron transport protein, periplasmic-binding protein; Code: P; COG: COG0803; Belongs to the bacterial solute-binding protein 9 family.	Iron transport protein, inner membrane component; Code: P; COG: COG1108.	0.999
sitA	yebI	SDY_1457	SDY_1146	Iron transport protein, periplasmic-binding protein; Code: P; COG: COG0803; Belongs to the bacterial solute-binding protein 9 family.	Conserved hypothetical protein; Code: P; COG: COG1108; orf.	0.911
sitA	yebL	SDY_1457	SDY_1144	Iron transport protein, periplasmic-binding protein; Code: P; COG: COG0803; Belongs to the bacterial solute-binding protein 9 family.	Putative adhesin; Code: P; COG: COG4531; Belongs to the bacterial solute-binding protein 9 family.	0.473
sitA	yebM	SDY_1457	SDY_1145	Iron transport protein, periplasmic-binding protein; Code: P; COG: COG0803; Belongs to the bacterial solute-binding protein 9 family.	Putative ATP-binding component of a transport system; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.	0.840
sitB	SDY_1033	SDY_1456	SDY_1033	Iron transport protein, ATP-binding component; Code: P; COG: COG1121.	Conserved hypothetical protein; Code: R; COG: COG3443; orf.	0.657
sitB	sitA	SDY_1456	SDY_1457	Iron transport protein, ATP-binding component; Code: P; COG: COG1121.	Iron transport protein, periplasmic-binding protein; Code: P; COG: COG0803; Belongs to the bacterial solute-binding protein 9 family.	0.999
sitB	sitD	SDY_1456	SDY_1454	Iron transport protein, ATP-binding component; Code: P; COG: COG1121.	Iron transport protein, inner membrane component; Code: P; COG: COG1108.	0.999
sitB	yebI	SDY_1456	SDY_1146	Iron transport protein, ATP-binding component; Code: P; COG: COG1121.	Conserved hypothetical protein; Code: P; COG: COG1108; orf.	0.771
sitB	yebL	SDY_1456	SDY_1144	Iron transport protein, ATP-binding component; Code: P; COG: COG1121.	Putative adhesin; Code: P; COG: COG4531; Belongs to the bacterial solute-binding protein 9 family.	0.754
sitD	SDY_1033	SDY_1454	SDY_1033	Iron transport protein, inner membrane component; Code: P; COG: COG1108.	Conserved hypothetical protein; Code: R; COG: COG3443; orf.	0.546