STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY_2272Conserved hypothetical protein; Code: O; COG: COG1397; orf. (334 aa)    
Predicted Functional Partners:
SDY_2273
Putative kinase; Code: G; COG: COG0524; Belongs to the carbohydrate kinase PfkB family.
   
 0.994
yegT
Putative nucleoside permease protein; Code: GEPR; COG: COG0477.
     0.958
SDY_2270
Conserved hypothetical protein; Code: G; COG: COG1830; orf.
       0.525
yegW
Putative transcriptional regulator; Code: K; COG: COG2188.
 
    0.512
glnK
Nitrogen regulatory protein P-II 2; Code: E; COG: COG0347; Belongs to the P(II) protein family.
    
 
 0.506
glnB
Regulatory protein P-II for glutamine synthetase; Code: E; COG: COG0347; Belongs to the P(II) protein family.
    
 
 0.506
ydhU
Conserved hypothetical protein; Code: C; COG: COG4117; orf.
  
     0.453
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
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