STRINGSTRING
JNHE01000001_gene129 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000001_gene129" - annotation not available in Pseudomonas oleovorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000001_gene129annotation not available (330 aa)    
Predicted Functional Partners:
JNHE01000001_gene128
annotation not available (285 aa)
 
     
  0.742
JNHE01000011_gene3611
annotation not available (284 aa)
   
        0.724
JNHE01000002_gene2333
annotation not available (202 aa)
   
          0.703
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (333 aa)
       
 
  0.701
JNHE01000002_gene2168
annotation not available (529 aa)
   
        0.679
JNHE01000001_gene176
annotation not available (575 aa)
       
      0.668
JNHE01000002_gene2169
annotation not available (324 aa)
   
          0.664
JNHE01000011_gene3612
annotation not available (424 aa)
   
          0.647
JNHE01000048_gene1514
annotation not available (278 aa)
   
          0.624
JNHE01000034_gene4181
annotation not available (315 aa)
   
          0.605
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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