STRINGSTRING
JNHE01000001_gene141 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000001_gene141" - annotation not available in Pseudomonas oleovorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000001_gene141annotation not available (439 aa)    
Predicted Functional Partners:
JNHE01000001_gene140
annotation not available (480 aa)
 
        0.976
rpoH
annotation not available (264 aa)
       
 
  0.700
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (602 aa)
       
 
  0.700
rpoS
annotation not available (316 aa)
       
 
  0.700
JNHE01000001_gene318
annotation not available (316 aa)
   
   
  0.694
JNHE01000001_gene139
annotation not available (803 aa)
              0.573
JNHE01000059_gene994
annotation not available (108 aa)
   
          0.447
JNHE01000012_gene1455
annotation not available (256 aa)
   
        0.443
JNHE01000003_gene2040
annotation not available (253 aa)
   
          0.442
JNHE01000030_gene617
annotation not available (279 aa)
   
          0.441
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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