STRINGSTRING
JNHE01000001_gene147 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000001_gene147" - annotation not available in Pseudomonas oleovorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000001_gene147annotation not available (164 aa)    
Predicted Functional Partners:
JNHE01000046_gene3778
annotation not available (68 aa)
   
          0.636
JNHE01000004_gene1639
annotation not available (183 aa)
   
          0.601
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3’ invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA’s homology-searching function (446 aa)
              0.591
JNHE01000036_gene4324
annotation not available (109 aa)
   
          0.583
JNHE01000014_gene2922
annotation not available (204 aa)
   
          0.556
JNHE01000022_gene2625
annotation not available (164 aa)
   
          0.516
JNHE01000003_gene1926
annotation not available (88 aa)
   
          0.515
JNHE01000020_gene4002
annotation not available (272 aa)
   
          0.494
JNHE01000022_gene2583
annotation not available (192 aa)
   
          0.483
JNHE01000002_gene2142
annotation not available (91 aa)
   
          0.483
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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