STRINGSTRING
JNHE01000001_gene240 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000001_gene240" - annotation not available in Pseudomonas oleovorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000001_gene240annotation not available (477 aa)    
Predicted Functional Partners:
JNHE01000001_gene239
annotation not available (275 aa)
 
        0.940
JNHE01000001_gene242
annotation not available (448 aa)
 
 
0.933
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (602 aa)
       
 
  0.744
JNHE01000001_gene237
annotation not available (485 aa)
       
  0.742
JNHE01000001_gene238
annotation not available (1273 aa)
   
        0.722
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3’-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family (202 aa)
            0.718
rpoH
annotation not available (264 aa)
       
 
  0.700
rpoS
annotation not available (316 aa)
       
 
  0.700
JNHE01000011_gene3640
annotation not available (207 aa)
       
  0.681
JNHE01000001_gene318
annotation not available (316 aa)
         
  0.642
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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