STRINGSTRING
JNHE01000001_gene241 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000001_gene241" - annotation not available in Pseudomonas oleovorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000001_gene241annotation not available (172 aa)    
Predicted Functional Partners:
JNHE01000001_gene242
annotation not available (448 aa)
   
        0.738
JNHE01000003_gene1848
annotation not available (193 aa)
           
  0.546
JNHE01000001_gene236
annotation not available (200 aa)
           
  0.546
rpmF
annotation not available (46 aa)
   
          0.482
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm (164 aa)
 
          0.470
rdgC
Recombination-associated protein RdgC; May be involved in recombination (312 aa)
 
          0.467
JNHE01000001_gene243
annotation not available (130 aa)
              0.464
JNHE01000001_gene246
annotation not available (203 aa)
              0.445
JNHE01000015_gene4429
annotation not available (415 aa)
   
 
      0.432
JNHE01000004_gene1720
annotation not available (212 aa)
   
          0.425
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
Server load: low (11%) [HD]