STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000001_gene461annotation not available (581 aa)    
Predicted Functional Partners:
JNHE01000001_gene462
annotation not available
 
    0.938
JNHE01000037_gene4281
annotation not available
 
  
 0.818
JNHE01000009_gene3325
annotation not available
 
    0.809
JNHE01000001_gene313
annotation not available
 
    0.805
JNHE01000037_gene4283
annotation not available
 
    0.805
JNHE01000042_gene3195
annotation not available
 
    0.805
JNHE01000001_gene406
Lipid A deacylase; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family
  
 0.804
JNHE01000037_gene4282
annotation not available
 
     0.794
JNHE01000041_gene3178
annotation not available
 
    0.790
JNHE01000019_gene4147
annotation not available
  
 
 
 0.774
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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