STRINGSTRING
JNHE01000001_gene542 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000001_gene542" - annotation not available in Pseudomonas oleovorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000001_gene542annotation not available (109 aa)    
Predicted Functional Partners:
guaB
Inosine-5’-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5’-phosphate (IMP) to xanthosine 5’-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth; Belongs to the IMPDH/GMPR family (489 aa)
       
  0.707
JNHE01000021_gene4039
annotation not available (367 aa)
       
  0.701
rpoH
annotation not available (264 aa)
       
      0.681
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (602 aa)
       
      0.681
rpoS
annotation not available (316 aa)
       
      0.681
JNHE01000001_gene543
annotation not available (266 aa)
              0.534
JNHE01000001_gene541
annotation not available (73 aa)
              0.531
JNHE01000002_gene2261
annotation not available (236 aa)
 
   
  0.526
JNHE01000014_gene2981
annotation not available (144 aa)
 
   
  0.488
JNHE01000003_gene1932
annotation not available (273 aa)
 
          0.462
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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