STRINGSTRING
JNHE01000001_gene566 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000001_gene566" - annotation not available in Pseudomonas oleovorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000001_gene566annotation not available (156 aa)    
Predicted Functional Partners:
JNHE01000023_gene2549
annotation not available (141 aa)
   
   
  0.806
JNHE01000017_gene4601
annotation not available (198 aa)
   
   
  0.783
JNHE01000004_gene1663
annotation not available (141 aa)
   
   
  0.779
clpS
ATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation (81 aa)
     
      0.763
JNHE01000033_gene972
annotation not available (732 aa)
     
 
  0.760
JNHE01000006_gene1172
annotation not available (144 aa)
     
        0.754
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (494 aa)
     
      0.749
JNHE01000017_gene4611
annotation not available (105 aa)
   
        0.736
JNHE01000017_gene4604
annotation not available (234 aa)
     
      0.733
JNHE01000044_gene3834
annotation not available (848 aa)
     
 
  0.723
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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