STRINGSTRING
JNHE01000002_gene2109 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000002_gene2109" - annotation not available in Pseudomonas oleovorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000002_gene2109annotation not available (278 aa)    
Predicted Functional Partners:
JNHE01000004_gene1599
annotation not available (305 aa)
     
  0.728
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (333 aa)
     
 
  0.708
JNHE01000030_gene646
annotation not available (50 aa)
   
     
  0.690
JNHE01000036_gene4324
annotation not available (109 aa)
   
          0.688
JNHE01000001_gene176
annotation not available (575 aa)
     
      0.682
JNHE01000002_gene2110
annotation not available (75 aa)
 
          0.679
JNHE01000018_gene3859
annotation not available (535 aa)
 
   
    0.646
JNHE01000002_gene2104
annotation not available (468 aa)
 
   
    0.640
JNHE01000018_gene3891
annotation not available (159 aa)
   
          0.633
leuC
3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate; Belongs to the aconitase/IPM isomerase family. LeuC type 1 subfamily (475 aa)
       
    0.618
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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