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JNHE01000002_gene2117 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000002_gene2117" - annotation not available in Pseudomonas oleovorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000002_gene2117annotation not available (250 aa)    
Predicted Functional Partners:
JNHE01000001_gene193
annotation not available (387 aa)
 
  0.926
JNHE01000043_gene3242
annotation not available (293 aa)
       
  0.881
JNHE01000016_gene4474
annotation not available (736 aa)
     
  0.859
JNHE01000034_gene4185
Carboxynorspermidine/carboxyspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily (365 aa)
   
  0.849
JNHE01000003_gene1882
annotation not available (245 aa)
   
 
  0.830
JNHE01000018_gene3888
annotation not available (226 aa)
   
        0.790
JNHE01000018_gene3857
annotation not available (319 aa)
   
 
  0.786
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (69 aa)
     
        0.777
JNHE01000009_gene3356
annotation not available (188 aa)
   
      0.758
rplX
50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit (104 aa)
     
        0.757
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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