STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000002_gene2297annotation not available (87 aa)    
Predicted Functional Partners:
JNHE01000003_gene1887
annotation not available
  
    0.873
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
   
  
 0.682
JNHE01000009_gene3296
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA
   
  
 0.680
JNHE01000053_gene2694
annotation not available
  
     0.623
JNHE01000015_gene4404
annotation not available
  
     0.615
JNHE01000001_gene333
annotation not available
  
     0.613
JNHE01000003_gene1888
annotation not available
  
     0.596
JNHE01000016_gene4467
annotation not available
  
     0.588
JNHE01000012_gene1449
annotation not available
  
     0.587
JNHE01000003_gene1867
annotation not available
  
     0.575
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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