STRINGSTRING
JNHE01000003_gene1881 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000003_gene1881" - annotation not available in Pseudomonas oleovorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000003_gene1881annotation not available (173 aa)    
Predicted Functional Partners:
mfd
Transcription-repair-coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site (1145 aa)
   
        0.871
JNHE01000001_gene458
annotation not available (106 aa)
   
          0.764
JNHE01000007_gene1314
annotation not available (108 aa)
   
          0.729
JNHE01000009_gene3324
annotation not available (876 aa)
   
          0.705
JNHE01000009_gene3340
annotation not available (90 aa)
   
          0.688
JNHE01000001_gene372
annotation not available (487 aa)
   
          0.647
JNHE01000001_gene373
annotation not available (456 aa)
   
          0.642
JNHE01000001_gene366
annotation not available (216 aa)
   
          0.639
JNHE01000006_gene1129
annotation not available (227 aa)
   
          0.627
JNHE01000001_gene374
annotation not available (387 aa)
   
          0.625
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
Server load: low (18%) [HD]