STRINGSTRING
JNHE01000003_gene1988 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000003_gene1988" - annotation not available in Pseudomonas oleovorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000003_gene1988annotation not available (212 aa)    
Predicted Functional Partners:
JNHE01000015_gene4443
annotation not available (414 aa)
          0.870
cmoB
tRNA U34 carboxymethyltransferase; Catalyzes carboxymethyl transfer from carboxy-S- adenosyl-L-methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5-carboxymethoxyuridine (cmo5U) at position 34 in tRNAs (322 aa)
              0.695
cmoA
Carboxy-S-adenosyl-L-methionine synthase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM) (247 aa)
              0.649
JNHE01000003_gene1987
annotation not available (411 aa)
              0.565
JNHE01000036_gene4324
annotation not available (109 aa)
   
          0.518
JNHE01000002_gene2109
annotation not available (278 aa)
 
          0.476
JNHE01000001_gene357
annotation not available (369 aa)
 
          0.404
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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