STRINGSTRING
JNHE01000003_gene2007 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000003_gene2007" - annotation not available in Pseudomonas oleovorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000003_gene2007annotation not available (67 aa)    
Predicted Functional Partners:
JNHE01000012_gene1395
annotation not available (570 aa)
 
  0.949
JNHE01000002_gene2313
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family (507 aa)
       
    0.888
JNHE01000042_gene3192
annotation not available (547 aa)
   
  0.827
JNHE01000001_gene478
annotation not available (587 aa)
   
  0.827
JNHE01000012_gene1393
annotation not available (68 aa)
 
 
  0.820
JNHE01000012_gene1396
annotation not available (217 aa)
 
  0.800
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs (125 aa)
     
        0.732
JNHE01000012_gene1394
Succinate dehydrogenase hydrophobic membrane anchor subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH) (106 aa)
 
 
    0.728
JNHE01000001_gene466
annotation not available (211 aa)
       
      0.728
JNHE01000023_gene2515
annotation not available (78 aa)
   
  0.723
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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