STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000004_gene1599annotation not available (305 aa)    
Predicted Functional Partners:
JNHE01000004_gene1600
annotation not available
 
    0.971
JNHE01000016_gene4561
annotation not available
 
 0.881
JNHE01000031_gene706
annotation not available
 
 
 0.873
JNHE01000004_gene1598
annotation not available
 
  
 0.864
JNHE01000009_gene3320
annotation not available
     0.835
JNHE01000048_gene1517
annotation not available
 0.835
JNHE01000048_gene1516
annotation not available
 
 0.832
JNHE01000032_gene925
annotation not available
 
 
 0.831
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis
  
 
 0.830
JNHE01000048_gene1514
annotation not available
     0.825
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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