STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000004_gene1712annotation not available (561 aa)    
Predicted Functional Partners:
JNHE01000007_gene1263
annotation not available
 
 
 0.987
JNHE01000007_gene1265
annotation not available
 
 
 0.978
JNHE01000007_gene1247
annotation not available
 
 
 0.974
fliA
RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes
  
 0.952
JNHE01000049_gene1484
annotation not available
 
 
 0.951
JNHE01000007_gene1239
annotation not available
 
  
 0.939
JNHE01000020_gene3953
annotation not available
 
 
 0.934
JNHE01000007_gene1264
annotation not available
 
 
 0.926
JNHE01000020_gene3952
annotation not available
 
 
 0.925
JNHE01000007_gene1240
annotation not available
 
 
 0.924
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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