STRINGSTRING
JNHE01000006_gene1008 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000006_gene1008" - annotation not available in Pseudomonas oleovorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000006_gene1008annotation not available (295 aa)    
Predicted Functional Partners:
rlmJ
Ribosomal RNA large subunit methyltransferase J; Specifically methylates the adenine in position 2030 of 23S rRNA (284 aa)
     
      0.775
JNHE01000006_gene1009
annotation not available (405 aa)
 
      0.735
JNHE01000006_gene1010
annotation not available (350 aa)
              0.669
JNHE01000029_gene739
annotation not available (306 aa)
   
          0.643
JNHE01000004_gene1756
annotation not available (289 aa)
   
   
  0.621
JNHE01000001_gene441
annotation not available (318 aa)
   
          0.515
JNHE01000015_gene4384
annotation not available (305 aa)
   
   
  0.510
JNHE01000002_gene2286
annotation not available (299 aa)
   
        0.489
JNHE01000013_gene2776
annotation not available (311 aa)
   
   
  0.483
JNHE01000001_gene200
annotation not available (295 aa)
   
          0.448
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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