STRINGSTRING
JNHE01000006_gene1072 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000006_gene1072" - annotation not available in Pseudomonas oleovorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000006_gene1072annotation not available (83 aa)    
Predicted Functional Partners:
JNHE01000006_gene1071
annotation not available (180 aa)
   
        0.860
fbp
annotation not available (335 aa)
              0.690
JNHE01000006_gene1073
annotation not available (204 aa)
              0.690
JNHE01000034_gene4178
annotation not available (230 aa)
   
          0.642
JNHE01000034_gene4177
annotation not available (943 aa)
   
          0.623
JNHE01000034_gene4179
annotation not available (413 aa)
   
          0.617
JNHE01000001_gene406
Lipid A deacylase; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family (154 aa)
   
          0.585
JNHE01000018_gene3869
annotation not available (174 aa)
   
          0.571
JNHE01000008_gene3728
annotation not available (114 aa)
   
          0.511
slyX
annotation not available (68 aa)
   
        0.506
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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