STRINGSTRING
JNHE01000006_gene1078 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000006_gene1078" - annotation not available in Pseudomonas oleovorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000006_gene1078annotation not available (131 aa)    
Predicted Functional Partners:
JNHE01000025_gene2855
annotation not available (515 aa)
   
          0.599
JNHE01000028_gene828
annotation not available (84 aa)
   
          0.559
JNHE01000014_gene2936
annotation not available (177 aa)
   
        0.533
JNHE01000025_gene2869
annotation not available (327 aa)
   
          0.530
JNHE01000002_gene2091
annotation not available (88 aa)
   
          0.507
rsmJ
Ribosomal RNA small subunit methyltransferase J; Specifically methylates the guanosine in position 1516 of 16S rRNA (259 aa)
 
        0.500
JNHE01000032_gene905
annotation not available (103 aa)
   
          0.498
JNHE01000003_gene1793
annotation not available (91 aa)
   
          0.496
JNHE01000008_gene3751
annotation not available (88 aa)
   
          0.494
JNHE01000011_gene3586
annotation not available (94 aa)
   
          0.488
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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