STRINGSTRING
JNHE01000006_gene1083 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000006_gene1083" - annotation not available in Pseudomonas oleovorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000006_gene1083annotation not available (316 aa)    
Predicted Functional Partners:
JNHE01000006_gene1081
annotation not available (295 aa)
 
     
  0.809
JNHE01000006_gene1082
annotation not available (310 aa)
 
          0.650
rpoH
annotation not available (264 aa)
       
      0.600
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (602 aa)
       
      0.600
rpoS
annotation not available (316 aa)
       
      0.600
JNHE01000038_gene5
annotation not available (1007 aa)
 
        0.574
JNHE01000006_gene1090
annotation not available (686 aa)
 
          0.563
JNHE01000038_gene4
annotation not available (108 aa)
 
          0.552
JNHE01000006_gene1080
annotation not available (321 aa)
 
     
  0.536
JNHE01000038_gene6
annotation not available (209 aa)
 
          0.528
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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