STRINGSTRING
JNHE01000006_gene1107 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000006_gene1107" - annotation not available in Pseudomonas oleovorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000006_gene1107annotation not available (411 aa)    
Predicted Functional Partners:
JNHE01000020_gene3970
annotation not available (1161 aa)
     
0.838
JNHE01000002_gene2274
annotation not available (1466 aa)
 
  0.826
JNHE01000007_gene1277
annotation not available (562 aa)
 
0.813
JNHE01000012_gene1434
annotation not available (606 aa)
 
  0.801
JNHE01000006_gene1003
annotation not available (875 aa)
 
0.788
JNHE01000001_gene153
annotation not available (1378 aa)
 
 
0.783
JNHE01000006_gene1106
annotation not available (458 aa)
     
      0.758
rplV
50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome (104 aa)
     
        0.755
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (103 aa)
     
        0.755
JNHE01000010_gene3553
annotation not available (1404 aa)
 
  0.754
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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