STRINGSTRING
JNHE01000009_gene3288 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000009_gene3288" - annotation not available in Pseudomonas oleovorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000009_gene3288annotation not available (145 aa)    
Predicted Functional Partners:
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3’terminus. GreA releases sequences of 2 to 3 nucleotides (158 aa)
   
        0.849
carB
annotation not available (1073 aa)
              0.845
JNHE01000001_gene596
annotation not available (97 aa)
   
          0.729
carA
annotation not available (349 aa)
              0.727
JNHE01000006_gene1131
annotation not available (98 aa)
   
          0.702
JNHE01000002_gene2142
annotation not available (91 aa)
   
          0.696
JNHE01000035_gene4250
annotation not available (99 aa)
   
          0.675
JNHE01000028_gene812
annotation not available (193 aa)
   
          0.661
JNHE01000016_gene4548
annotation not available (287 aa)
   
          0.657
JNHE01000003_gene1985
annotation not available (97 aa)
   
          0.656
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
Server load: low (14%) [HD]