STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000009_gene3299annotation not available (106 aa)    
Predicted Functional Partners:
JNHE01000009_gene3300
annotation not available
 
  
 0.960
JNHE01000009_gene3301
annotation not available
       0.795
JNHE01000003_gene2062
Electron transport complex subunit B; Part of a membrane complex involved in electron transport; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily
 
   
 0.722
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
  
    0.664
JNHE01000029_gene769
annotation not available
 
   
 0.507
JNHE01000015_gene4400
annotation not available
  
     0.498
JNHE01000003_gene2063
annotation not available
 
   
 0.443
JNHE01000029_gene770
Electron transport complex subunit D; Part of a membrane complex involved in electron transport
 
   
 0.415
JNHE01000029_gene768
Electron transport complex subunit E; Part of a membrane complex involved in electron transport
 
   
 0.409
JNHE01000003_gene2001
annotation not available
 
     0.400
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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