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JNHE01000009_gene3301 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000009_gene3301" - annotation not available in Pseudomonas oleovorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000009_gene3301annotation not available (467 aa)    
Predicted Functional Partners:
JNHE01000009_gene3300
annotation not available (135 aa)
 
        0.922
JNHE01000009_gene3299
annotation not available (106 aa)
              0.795
JNHE01000010_gene3425
annotation not available (446 aa)
   
        0.672
JNHE01000001_gene144
annotation not available (342 aa)
   
        0.672
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] (160 aa)
              0.642
JNHE01000006_gene1152
annotation not available (496 aa)
 
   
  0.623
JNHE01000020_gene4001
annotation not available (479 aa)
 
   
  0.608
JNHE01000002_gene2313
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family (507 aa)
     
        0.511
JNHE01000010_gene3556
annotation not available (396 aa)
     
        0.440
JNHE01000004_gene1617
annotation not available (509 aa)
     
        0.420
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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