STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000010_gene3546annotation not available (266 aa)    
Predicted Functional Partners:
JNHE01000010_gene3545
annotation not available
 
 0.991
JNHE01000010_gene3543
annotation not available
 
 0.978
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates
 
 
 0.963
JNHE01000010_gene3542
annotation not available
 
  
 0.911
JNHE01000010_gene3547
annotation not available
 
    0.735
cysC
Multifunctional fusion protein; Catalyzes the synthesis of activated sulfate; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily
    
 0.719
JNHE01000006_gene1026
annotation not available
 
 0.718
JNHE01000016_gene4552
annotation not available
 
 0.715
JNHE01000010_gene3518
annotation not available
 
 
 0.710
JNHE01000002_gene2143
annotation not available
 
 
 0.662
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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