STRINGSTRING
JNHE01000011_gene3627 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000011_gene3627" - annotation not available in Pseudomonas oleovorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000011_gene3627annotation not available (202 aa)    
Predicted Functional Partners:
JNHE01000026_gene3091
annotation not available (922 aa)
 
 
  0.946
leuS
annotation not available (870 aa)
   
   
  0.815
JNHE01000001_gene255
annotation not available (188 aa)
   
   
  0.814
JNHE01000056_gene3703
annotation not available (373 aa)
   
   
  0.809
JNHE01000011_gene3626
annotation not available (342 aa)
   
   
  0.765
JNHE01000001_gene238
annotation not available (1273 aa)
 
          0.699
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm (164 aa)
   
 
  0.667
JNHE01000001_gene586
annotation not available (133 aa)
   
          0.657
JNHE01000050_gene2718
annotation not available (84 aa)
   
          0.653
JNHE01000034_gene4191
annotation not available (263 aa)
   
        0.646
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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