STRINGSTRING
JNHE01000012_gene1372 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000012_gene1372" - annotation not available in Pseudomonas oleovorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000012_gene1372annotation not available (145 aa)    
Predicted Functional Partners:
JNHE01000012_gene1373
annotation not available (194 aa)
 
        0.703
JNHE01000026_gene3102
annotation not available (409 aa)
     
      0.693
pcnB
Poly(A) polymerase I; Adds poly(A) tail to the 3’ end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control (440 aa)
     
      0.693
JNHE01000032_gene910
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (372 aa)
       
    0.665
JNHE01000007_gene1343
annotation not available (368 aa)
   
   
    0.590
JNHE01000007_gene1262
annotation not available (66 aa)
     
        0.538
JNHE01000016_gene4561
annotation not available (714 aa)
 
  0.532
JNHE01000025_gene2873
annotation not available (403 aa)
 
          0.451
JNHE01000014_gene2930
annotation not available (364 aa)
   
   
    0.442
JNHE01000008_gene3725
annotation not available (346 aa)
   
          0.433
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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