STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000015_gene4397annotation not available (306 aa)    
Predicted Functional Partners:
JNHE01000019_gene4162
annotation not available
  
     0.697
JNHE01000001_gene441
annotation not available
  
     0.663
JNHE01000001_gene200
annotation not available
  
     0.657
JNHE01000015_gene4396
annotation not available
       0.645
JNHE01000040_gene75
Ribosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle
     0.607
JNHE01000002_gene2131
annotation not available
  
     0.597
JNHE01000009_gene3390
annotation not available
  
     0.578
JNHE01000002_gene2279
annotation not available
  
     0.548
JNHE01000002_gene2278
annotation not available
  
     0.547
JNHE01000002_gene2409
annotation not available
  
     0.537
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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