STRINGSTRING
JNHE01000015_gene4440 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000015_gene4440" - annotation not available in Pseudomonas oleovorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000015_gene4440annotation not available (149 aa)    
Predicted Functional Partners:
JNHE01000015_gene4439
annotation not available (111 aa)
              0.671
trmJ
tRNA (cytidine/uridine-2’-O-)-methyltransferase TrmJ; Catalyzes the formation of 2’O-methylated cytidine (Cm32) or 2’O-methylated uridine (Um32) at position 32 in tRNA (232 aa)
   
        0.610
JNHE01000015_gene4438
annotation not available (629 aa)
   
        0.603
JNHE01000034_gene4200
annotation not available (787 aa)
     
        0.559
JNHE01000003_gene2001
annotation not available (148 aa)
     
        0.537
xseA
Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family (459 aa)
     
        0.532
JNHE01000042_gene3202
annotation not available (207 aa)
   
        0.512
JNHE01000030_gene641
annotation not available (158 aa)
            0.499
JNHE01000006_gene1008
annotation not available (295 aa)
   
        0.435
JNHE01000015_gene4437
annotation not available (210 aa)
   
        0.425
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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