STRINGSTRING
JNHE01000016_gene4478 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000016_gene4478" - annotation not available in Pseudomonas oleovorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000016_gene4478annotation not available (257 aa)    
Predicted Functional Partners:
JNHE01000029_gene765
annotation not available (130 aa)
 
 
  0.961
JNHE01000028_gene779
annotation not available (179 aa)
 
 
  0.942
JNHE01000018_gene3932
annotation not available (331 aa)
   
 
  0.839
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (150 aa)
         
  0.812
gshB
annotation not available (318 aa)
   
      0.812
JNHE01000042_gene3201
annotation not available (128 aa)
     
 
  0.781
JNHE01000009_gene3318
annotation not available (215 aa)
   
   
0.771
JNHE01000011_gene3681
annotation not available (144 aa)
     
 
  0.768
dnaQ
DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3’-5’ exonuclease (252 aa)
         
  0.758
dld
Quinone-dependent D-lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate; Belongs to the quinone-dependent D-lactate dehydrogenase family (571 aa)
         
  0.737
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
Server load: low (11%) [HD]