STRINGSTRING
rnd protein (Pseudomonas oleovorans) - STRING interaction network
"rnd" - Ribonuclease D in Pseudomonas oleovorans
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rndRibonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides; Belongs to the RNase D family (377 aa)    
Predicted Functional Partners:
rnr
Ribonuclease R; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (829 aa)
     
  0.953
JNHE01000018_gene3885
annotation not available (97 aa)
 
          0.947
rph
Ribonuclease PH; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (239 aa)
   
  0.943
rnt
Ribonuclease T; Trims short 3’ overhangs of a variety of RNA species, leaving a one or two nucleotide 3’ overhang. Responsible for the end-turnover of tRNA- specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis (224 aa)
 
  0.924
JNHE01000006_gene1203
annotation not available (775 aa)
   
 
  0.891
JNHE01000004_gene1650
annotation not available (903 aa)
   
 
  0.886
JNHE01000018_gene3884
annotation not available (310 aa)
         
  0.886
JNHE01000018_gene3883
annotation not available (149 aa)
 
        0.875
orn
Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides (180 aa)
       
  0.871
JNHE01000003_gene1852
annotation not available (999 aa)
     
 
  0.867
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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