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JNHE01000018_gene3888 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000018_gene3888" - annotation not available in Pseudomonas oleovorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000018_gene3888annotation not available (226 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (238 aa)
   
  0.869
JNHE01000025_gene2845
annotation not available (257 aa)
   
  0.869
JNHE01000009_gene3286
annotation not available (207 aa)
     
   
  0.805
cysS
annotation not available (460 aa)
   
 
  0.791
JNHE01000002_gene2117
annotation not available (250 aa)
   
        0.790
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (269 aa)
   
   
  0.767
JNHE01000007_gene1316
annotation not available (288 aa)
     
        0.754
JNHE01000001_gene201
annotation not available (295 aa)
     
        0.754
JNHE01000001_gene193
annotation not available (387 aa)
       
    0.747
JNHE01000018_gene3925
annotation not available (452 aa)
   
 
  0.716
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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