STRINGSTRING
JNHE01000018_gene3896 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000018_gene3896" - annotation not available in Pseudomonas oleovorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000018_gene3896annotation not available (309 aa)    
Predicted Functional Partners:
JNHE01000018_gene3895
annotation not available (295 aa)
 
 
  0.968
JNHE01000002_gene2195
annotation not available (343 aa)
 
 
  0.950
JNHE01000015_gene4414
annotation not available (266 aa)
   
   
  0.778
serS
Serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) (426 aa)
     
      0.719
JNHE01000002_gene2194
annotation not available (317 aa)
   
   
 
0.716
JNHE01000001_gene337
annotation not available (944 aa)
   
      0.715
JNHE01000031_gene706
annotation not available (3642 aa)
       
  0.698
JNHE01000012_gene1422
annotation not available (128 aa)
       
  0.670
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (198 aa)
     
      0.669
JNHE01000033_gene955
annotation not available (465 aa)
 
   
  0.650
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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