STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000018_gene3899annotation not available (390 aa)    
Predicted Functional Partners:
JNHE01000018_gene3898
annotation not available
       0.845
JNHE01000018_gene3900
annotation not available
  
  
 0.741
JNHE01000018_gene3897
annotation not available
  
  
 0.665
JNHE01000001_gene176
annotation not available
   
 
 0.659
JNHE01000010_gene3523
annotation not available
  
 
 0.581
dusA
tRNA-dihydrouridine(20/20a) synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily
      
 0.538
JNHE01000001_gene448
annotation not available
  
 
 0.523
JNHE01000003_gene1902
annotation not available
   
    0.504
JNHE01000018_gene3902
annotation not available
    
  0.493
JNHE01000010_gene3528
annotation not available
  
  
 0.486
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
Server load: low (11%) [HD]