STRINGSTRING
JNHE01000020_gene3978 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000020_gene3978" - annotation not available in Pseudomonas oleovorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000020_gene3978annotation not available (208 aa)    
Predicted Functional Partners:
JNHE01000015_gene4430
annotation not available (163 aa)
 
 
  0.991
JNHE01000011_gene3666
annotation not available (576 aa)
 
 
  0.911
JNHE01000014_gene2973
annotation not available (609 aa)
 
 
  0.910
JNHE01000007_gene1311
annotation not available (179 aa)
   
  0.908
JNHE01000010_gene3469
annotation not available (672 aa)
   
 
  0.898
JNHE01000020_gene3977
annotation not available (290 aa)
              0.847
JNHE01000020_gene3976
annotation not available (641 aa)
              0.825
secY
Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently (428 aa)
   
 
  0.804
JNHE01000004_gene1662
Thiol-disulfide interchange protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process (242 aa)
   
 
 
  0.787
JNHE01000028_gene812
annotation not available (193 aa)
   
  0.764
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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