STRINGSTRING
JNHE01000020_gene3990 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000020_gene3990" - annotation not available in Pseudomonas oleovorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000020_gene3990annotation not available (67 aa)    
Predicted Functional Partners:
JNHE01000020_gene3988
annotation not available (192 aa)
 
          0.882
JNHE01000020_gene3989
annotation not available (242 aa)
 
          0.800
JNHE01000002_gene2298
annotation not available (80 aa)
   
          0.704
JNHE01000009_gene3340
annotation not available (90 aa)
   
          0.681
JNHE01000020_gene3987
annotation not available (351 aa)
 
          0.679
JNHE01000004_gene1634
annotation not available (107 aa)
   
          0.668
JNHE01000001_gene158
annotation not available (57 aa)
   
          0.618
JNHE01000002_gene2110
annotation not available (75 aa)
   
          0.613
JNHE01000009_gene3288
annotation not available (145 aa)
   
          0.600
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily (301 aa)
 
          0.591
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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