STRINGSTRING
JNHE01000021_gene4057 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000021_gene4057" - annotation not available in Pseudomonas oleovorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000021_gene4057annotation not available (288 aa)    
Predicted Functional Partners:
JNHE01000021_gene4056
annotation not available (202 aa)
        0.862
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (229 aa)
            0.719
JNHE01000021_gene4058
annotation not available (99 aa)
              0.696
JNHE01000050_gene2726
Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1-methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose (289 aa)
       
    0.674
JNHE01000021_gene4060
annotation not available (225 aa)
              0.628
JNHE01000021_gene4054
Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves (271 aa)
              0.581
JNHE01000021_gene4055
annotation not available (391 aa)
              0.559
JNHE01000021_gene4059
annotation not available (126 aa)
              0.497
JNHE01000021_gene4052
annotation not available (265 aa)
              0.483
JNHE01000021_gene4048
annotation not available (351 aa)
 
 
      0.452
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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