STRINGSTRING
JNHE01000028_gene778 protein (Pseudomonas oleovorans) - STRING interaction network
"JNHE01000028_gene778" - annotation not available in Pseudomonas oleovorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNHE01000028_gene778annotation not available (152 aa)    
Predicted Functional Partners:
JNHE01000032_gene934
annotation not available (415 aa)
   
      0.712
JNHE01000045_gene3816
annotation not available (1190 aa)
     
      0.687
JNHE01000032_gene900
annotation not available (365 aa)
     
      0.687
JNHE01000001_gene400
annotation not available (545 aa)
     
      0.687
JNHE01000057_gene106
annotation not available (585 aa)
   
   
  0.612
JNHE01000021_gene4072
annotation not available (272 aa)
           
  0.545
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily (787 aa)
         
  0.544
JNHE01000028_gene779
annotation not available (179 aa)
   
        0.537
JNHE01000025_gene2842
annotation not available (482 aa)
 
        0.505
hldE
Bifunctional protein HldE; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose; In the N-terminal section; belongs to the carbohydrate kinase PfkB family (473 aa)
     
   
  0.436
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 8062, CCUG 2087, CFBP 5589, CIP 59.11, IFO 13583, JCM 11598, LMG 2229, NBRC 13583, NCIMB 6576, NCTC 10692, NRRL B-778, P. oleovorans, Pseudomonas oleovorans, Pseudomonas sp. MGY01
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