STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4135_1568Hypothetical protein; Putative dipeptidase. (415 aa)    
Predicted Functional Partners:
B4135_1562
Hypothetical protein; Hydrolase, alpha/beta fold family.
 
     0.726
B4135_1569
Hypothetical protein; Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1); Belongs to the ABC transporter superfamily.
       0.686
B4135_1567
Hypothetical protein; Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1).
 
     0.684
B4135_1570
Cupin 2, conserved barrel domain protein.
       0.610
menC
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
 
     0.497
B4135_1565
Hypothetical protein; Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1).
       0.470
B4135_1566
Hypothetical protein.
       0.464
B4135_1571
Hypothetical protein.
       0.420
B4135_3166
Hypothetical protein; Cobalt dependent X-Pro dipeptidase.
 
    0.419
Your Current Organism:
Caldibacillus debilis
NCBI taxonomy Id: 301148
Other names: C. debilis, Caldibacillus debilis (Banat et al. 2004) Coorevits et al. 2012, DSM 16016, Geobacillus debilis, Geobacillus debilis Banat et al. 2004, LMG 23386, LMG:23386, NCIMB 13995, strain R-35653, strain Tf
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