STRINGSTRING
rtl protein (Chlamydomonas reinhardtii) - STRING interaction network
"rtl" - Reverse transcriptase-like protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtlReverse transcriptase-like protein (368 aa)    
Predicted Functional Partners:
nad1
NADH dehydrogenase subunit 1 (292 aa)
     
   
  0.888
cob
Cytochrome b (381 aa)
     
   
  0.859
nad4
NADH dehydrogenase subunit 4 (443 aa)
     
   
  0.828
nad6
NADH dehydrogenase subunit 6 (162 aa)
     
   
  0.810
nad5
NADH dehydrogenase subunit 5 (546 aa)
     
   
  0.792
cox1
Cytochrome oxidase subunit 1 (505 aa)
     
   
  0.692
SDH4
Succinate dehydrogenase subunit D (87 aa)
           
  0.575
MST2
Predicted protein (679 aa)
           
  0.571
SDH3
Succinate dehydrogenase subunit b560 (203 aa)
           
  0.539
nad2
NADH dehydrogenase subunit 2 (382 aa)
     
   
  0.516
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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