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EDO96250 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDO96250" - Histone deacetylase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDO96250Histone deacetylase (273 aa)    
Predicted Functional Partners:
EDP00599
Nucleosome remodeling factor (418 aa)
     
  0.977
EDO96788
SIN3 component of histone deacetylase complex (542 aa)
     
  0.970
EDO98779
MRG family protein (207 aa)
     
  0.924
EDP03175
Histone methyltransferase (1708 aa)
   
  0.915
SET4
Histone methyltransferase (2983 aa)
   
  0.913
MAT3
Retinoblastoma protein (1209 aa)
     
  0.912
EDP01479
Predicted protein (1973 aa)
   
  0.911
EDO99237
Histone deacetylase (396 aa)
   
  0.910
EDP02327
Histone methyltransferase (1105 aa)
   
  0.884
EDP02808
SWI/SNF chromatin remodeling complex component (837 aa)
     
  0.878
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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