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UAP56 protein (Chlamydomonas reinhardtii) - STRING interaction network
"UAP56" - Subunit of exon junction complex in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UAP56Subunit of exon junction complex (435 aa)    
Predicted Functional Partners:
REF1
RNA export factor (137 aa)
     
  0.997
SPLH2
DEAH-box nuclear pre-mRNA splicing factor (371 aa)
     
  0.952
EDP03946
Predicted protein (96 aa)
   
  0.931
MGO1
Mago nashi-like protein (148 aa)
     
  0.929
RBM8A
RNA binding motif protein (144 aa)
     
  0.904
ABH1
mRNA cap-binding protein (1134 aa)
     
  0.894
PRP19
Spliceosome component, nuclear pre-mRNA splicing factor (503 aa)
     
  0.892
EDP01159
Predicted protein (170 aa)
   
  0.863
SPLH1
DEAH-box nuclear pre-mRNA splicing factor (689 aa)
     
  0.856
SPLH3
DEAH-box nuclear pre-mRNA splicing factor (661 aa)
     
  0.856
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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