STRINGSTRING
EDO96439 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDO96439" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDO96439Predicted protein (144 aa)    
Predicted Functional Partners:
ZDS1
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7’ (582 aa)
   
 
  0.981
PDS1
Phytoene desaturase (564 aa)
   
 
  0.979
EDO99516
Carotenoid isomerase (568 aa)
     
 
  0.645
EDP08879
Predicted protein (501 aa)
     
 
  0.591
EDP01276
Predicted protein (558 aa)
     
 
  0.591
EDP00013
Predicted protein (566 aa)
     
 
  0.565
PSRP-3
Plastid-specific ribosomal protein 3 (298 aa)
   
          0.526
EDP09648
Predicted protein (99 aa)
   
          0.525
EDP06655
Predicted protein (64 aa)
 
        0.524
GUN4
Tetrapyrrole-binding protein (260 aa)
   
          0.518
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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