STRINGSTRING
EDO96499 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDO96499" - Peptidyl-trna hydrolase in Chlamydomonas reinhardtii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDO96499Peptidyl-trna hydrolase (116 aa)    
Predicted Functional Partners:
PPR5
Hypothetical protein (627 aa)
           
  0.774
RAT2
Chloroplast tscA maturation factor (567 aa)
     
   
  0.720
ATPvD2
Vacuolar ATP synthase subunit D (253 aa)
       
      0.626
RPS15
Ribosomal protein S15 (145 aa)
       
      0.626
RAA2
Pseudouridine synthase-related protein (410 aa)
           
  0.579
RAA3
psaA mRNA maturation factor 3 (1783 aa)
           
  0.578
TBC2
Translation factor for chloroplast psbC mRNA (1115 aa)
     
   
  0.516
EDP00951
Predicted protein (420 aa)
     
        0.482
RAT1
Chloroplast tscA maturation factor (245 aa)
           
  0.476
EDP01638
Omega-6 fatty acid desaturase-like protein (391 aa)
     
        0.476
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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